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AfterQC

Automatic filtering, trimming, error removing, and quality control for FastQ data

https://github.com/OpenGene/AfterQC

AfterQC goes through all FastQ files in a folder and outputs three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair.

File search patterns​

afterqc:
  contents: allow_mismatch_in_poly
  fn: "*.json"
  num_lines: 10000