Salmon

Quantifies expression of transcripts using RNA-seq data

https://combine-lab.github.io/salmon/

The Salmon module parses meta_info.json, lib_format_counts.json and flenDist.txt files, if found.

Note that meta_info.json must be within a directory called either aux_info or aux and will be ignored otherwise.

File search patterns

salmon/fld:
  fn: flenDist.txt
salmon/lfc:
  fn: lib_format_counts.json
salmon/meta:
  contents: salmon_version
  fn: meta_info.json
  max_filesize: 50000
  num_lines: 10