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Pangolin

Uses variant calls to assign SARS-CoV-2 genome sequences to global lineages

https://github.com/cov-lineages/pangolin

Implements the dynamic nomenclature of SARS-CoV-2 lineages, known as the Pango nomenclature. It allows a user to assign a SARS-CoV-2 genome sequence the most likely lineage (Pango lineage) to SARS-CoV-2 query sequences.

File search patterns​

pangolin:
  contents: pangolin_version
  num_lines: 1