Bcftools
Utilities for variant calling and manipulating VCFs and BCFs
Supported commands: stats
Collapse complementary substitutions
In non-strand-specific data, reporting the total numbers of occurences for both changes
in a comlementary pair - like A>C and T>G - might not bring any additional information.
To collapse such statistics in the substitutions plot, you can add the following section into
your configuration:
bcftools:
collapse_complementary_changes: true
MultiQC will sum up all complementary changes and show only A>* and C>* substitutions
in the resulting plot.
File search patterns
bcftools/stats:
contents: This file was produced by bcftools stats