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RNA-SeQC

RNA-Seq metrics for quality control and process optimization

https://github.com/getzlab/rnaseqc

The module parses results generated by RNA-SeQC (not to be confused with RSeQC, which MultiQC also supports).

This module shows the Spearman correlation heatmap if both Spearman and Pearson's are found. To plot Pearson's by default instead, add the following to your MultiQC config file:

rna_seqc:
  default_correlation: pearson

File search patterns​

rna_seqc/correlation:
  fn_re: corrMatrix(Pearson|Spearman)\.txt
rna_seqc/coverage:
  fn_re: meanCoverageNorm_(high|medium|low)\.txt
rna_seqc/metrics_v1:
  contents: "Sample\tNote\t"
  fn: "*metrics.tsv"
rna_seqc/metrics_v2:
  contents: High Quality Ambiguous Alignment Rate
  fn: "*metrics.tsv"