THetA2

Estimates tumour purity and clonal / subclonal copy number

http://compbio.cs.brown.edu/projects/theta/

The module plots the % germline and % tumour subclone for each sample. Note that each sample can have multiple maximum likelihood solutions - the MultiQC module plots proportions for the first one in the results file (*.BEST.results). Also note that if there are more than 5 tumour subclones, their percentages are summed.

File search patterns

theta2:
  fn: "*.BEST.results"