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CCS

PacBio tool that generates highly accurate single-molecule consensus reads (HiFi Reads)

https://github.com/PacificBiosciences/ccs

CCS takes multiple subreads of the same SMRTbell molecule and combines them using a statistical model to produce one highly accurate consensus sequence, also called HiFi read, with base quality values. This tool powers the Circular Consensus Sequencing workflow in SMRT Link.

File search patterns​

ccs/v4:
  contents: ZMWs generating CCS
  max_filesize: 1024
  num_lines: 2
ccs/v5:
  contents: '"id": "ccs_processing"'
  fn: "*.json"