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ngsderive

Forensic tool for by backwards computing library information in sequencing data

https://github.com/stjudecloud/ngsderive

Results are provided as a 'best guess' — the tool does not claim 100% accuracy and results should be considered with that understanding. Please see the documentation for more information.

File search patterns​

ngsderive/encoding:
  contents: "File\tEvidence\tProbableEncoding"
  num_lines: 1
ngsderive/instrument:
  contents: "File\tInstrument\tConfidence\tBasis"
  num_lines: 1
ngsderive/junction_annotation:
  contents: "File\ttotal_junctions\ttotal_splice_events\tknown_junctions\tpartial_novel_junctions\t\
    complete_novel_junctions\tknown_spliced_reads\tpartial_novel_spliced_reads\tcomplete_novel_spliced_reads"
  num_lines: 1
ngsderive/readlen:
  contents: "File\tEvidence\tMajorityPctDetected\tConsensusReadLength"
  num_lines: 1
ngsderive/strandedness:
  contents: "File\tTotalReads\tForwardPct\tReversePct\tPredicted"
  num_lines: 1