fgbio

Processing and evaluating data containing UMIs

http://fulcrumgenomics.github.io/fgbio/

The module currently supports tool the following outputs:

• GroupReadsByUmi
• ErrorRateByReadPosition

File search patterns

fgbio/errorratebyreadposition:
  contents: "read_number\tposition\tbases_total\terrors\terror_rate\ta_to_c_error_rate\t\
    a_to_g_error_rate\ta_to_t_error_rate\tc_to_a_error_rate\tc_to_g_error_rate\tc_to_t_error_rate"
  num_lines: 3
fgbio/groupreadsbyumi:
  contents: fraction_gt_or_eq_family_size
  num_lines: 3