MALT
Aligns of metagenomic reads to a database of reference sequences (such as NR, GenBank or Silva) and outputs a MEGAN RMA file
The MALT MultiQC module reads the header of the MALT log files and produces three MultiQC sections:
- A MALT summary statistics table
- A Mappability bargraph
- A Taxonomic assignment success bargraph
File search patterns
malt:
contents: MaltRun - Aligns sequences using MALT (MEGAN alignment tool)
num_lines: 2