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MEGAHIT

NGS read assembler

https://github.com/voutcn/megahit

MultiQC will parse stdout/stderr logs from MEGAHIT runs. The sample name is taken from the file name (e.g. sample1.log will yield a sample name of sample1).

File search patterns​

megahit:
  contents: " - MEGAHIT v"
  num_lines: 5