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STAR

Universal RNA-seq aligner

https://github.com/alexdobin/STAR

This module parses summary statistics from the Log.final.out log files. Sample names are taken either from the filename prefix (sampleNameLog.final.out) when set with --outFileNamePrefix in STAR. If there is no filename prefix, the sample name is set as the name of the directory containing the file.

In addition to this summary log file, the module parses ReadsPerGene.out.tab files generated with --quantMode GeneCounts, if found.

File search patterns​

star:
  fn: "*Log.final.out"
star/genecounts:
  fn: "*ReadsPerGene.out.tab"