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QoRTs

Toolkit for analysis, QC, and data management of RNA-Seq datasets

http://hartleys.github.io/QoRTs/

Aids in the detection and identification of errors, biases, and artifacts produced by paired-end high-throughput RNA-Seq technology. In addition, it can produce count data designed for use with differential expression and differential exon usage tools, as well as individual-sample and/or group-summary genome track files suitable for use with the UCSC genome browser.

File search patterns​

qorts:
  contents: BENCHMARK_MinutesOnSamIteration
  num_lines: 100