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Bowtie 1

Ultrafast, memory-efficient short read aligner

http://bowtie-bio.sourceforge.net/

File search patterns​

bowtie1:
  contents: "# reads processed:"
  exclude_fn:
    - bowtie.left_kept_reads.log
    - bowtie.left_kept_reads.m2g_um.log
    - bowtie.left_kept_reads.m2g_um_seg1.log
    - bowtie.left_kept_reads.m2g_um_seg2.log
    - bowtie.right_kept_reads.log
    - bowtie.right_kept_reads.m2g_um.log
    - bowtie.right_kept_reads.m2g_um_seg1.log
    - bowtie.right_kept_reads.m2g_um_seg2.log
  shared: true