GoPeaks

Calls peaks in CUT&TAG/CUT&RUN datasets

https://github.com/maxsonBraunLab/gopeaks

Gopeaks uses a binomial distribution to model the read counts in sliding windows across the genome and calculate peak regions that are enriched over the background.

The module recognizes files with the *_gopeaks.json suffix (which is the default behavior), and will report the number of peaks called per sample via the general table and the bar plot.

File search patterns

gopeaks:
  fn: "*_gopeaks.json"