Seqera Platform CLI

Reports statistics generated by the Seqera Platform CLI

Seqera Platform CLI module for MultiQC.

Parses a tar-gz dump containing logs and stats from a Seqera Platform run, that is, the runs_SmUkr43Nul49G.tar.gz file generated by the following command:

tw runs dump -id=SmUkr43Nul49G --workspace=seqeralabs/benchmarks --output=runs_SmUkr43Nul49G.tar.gz

Expects the dump to contain a workflow.json file, along with workflow-load.json.

To allow reading the tar-gz archives, run with ignore_images: false in the config, e.g.:

multiqc . --cl-config 'ignore_images: false'

Can also parse an uncompressed version of the dump, that is, a workflow.json file and a workflow-load.json sitting together in a directory.

File search patterns

seqera_cli/json:
  fn: workflow.json
seqera_cli/run_dump:
  fn: runs_*.tar.gz

File search patterns​

File search patterns