JCVI Genome Annotation
Computes statistics on genome annotation
The JCVI module parses the output of python -m jcvi.annotation.stats genestats <input.gff>.
The file name is used as the sample name.
If the output from the python -m jcvi.annotation.stats stats <input.gff> is present in the same directory,
it is used to draw complementary plots.
A typical result directory will contain:
├── Exon_Count
│ ├── sample1.txt
│ └── sample2.txt
├── Exon_Length
│ ├── sample1.txt
│ └── sample2.txt
├── Gene_Length
│ ├── sample1.txt
│ └── sample2.txt
├── Intron_Length
│ ├── sample1.txt
│ └── sample2.txt
├── sample1_genestats.txt
└── sample2_genestats.txt
The JCVI module has been tested with output from JCVI v1.0.9.
File search patterns
jcvi:
contents: " o % GC % of genome Average size (bp) Median size (bp) Number Total
length (Mb)"