pycoQC

Computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data

https://github.com/tleonardi/pycoQC

PycoQC relies on the sequencing_summary.txt file generated by Albacore and Guppy, but if needed it can also generate a summary file from basecalled fast5 files.

The package supports 1D and 1D2 runs generated with MinION, GridION and PromethION devices and basecalled with Albacore 1.2.1+ or Guppy 2.1.3+.

File search patterns

pycoqc:
  contents: '"pycoqc":'
  num_lines: 2