bcl2fastq

Demultiplexes data and converts BCL files to FASTQ file formats for downstream analysis

https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.html

There are two versions of this software: bcl2fastq for MiSeq and HiSeq sequencing systems running RTA versions earlier than 1.8, and bcl2fastq2 for Illumina sequencing systems running RTA version 1.18.54 and above. This module currently only covers output from the latter.

File search patterns

bcl2fastq:
  contents: DemuxResults
  fn: Stats.json
  num_lines: 300

File search patterns​

File search patterns