HOPS

Ancient DNA characteristics screening tool of output from the metagenomic aligner MALT

https://github.com/rhuebler/HOPS/

This module takes the JSON output of the HOPS postprocessing R script (version >= 0.34) to recreate the possible positives heatmap, with the heat intensity representing the number of 'ancient DNA characteristics' categories (small edit distance, damage, both edit distance and aDNA damage) that a particular taxon has.

File search patterns

hops:
  fn: heatmap_overview_Wevid.json